Enter these on the passcode screen: 

BUTTERFLY - Unlocks All Missions 
TANG - "Bullet Shield" mode 
GOBY - Unlimitied Ammunition 
MANDARIN - "Achilles Head Mode" 
PUFFER - "Always Sniper" mode 
BANNER - Invincibility 
PARROT - Invisible Soldiers
DOTTYBACK - Men with Hats 
TRIGGER - "Invisible Soldiers" mode 
HOGFISH - "Perfectionist" mode 
DAMSEL - "Rubber Grenades" mode 
GARIBALDI - All Replay Items 
SPINEFOOT - Makes Everyone's Arms Huge 
SEAHORSE - Men With Hats 
TILEFISH - Silver Bullet Mode
CARDINAL - Achilles Head
BOXFISH - All Replay Items 
WRASSE - Bullet Shield 
BETTA - Rubber Grenades 
BATFISH - Silver Bullet 
JAWFISH - Unlimited Ammo
TUSKFISH - Unlock All Missions

How to find the Trench tool: 
The trench tool digs up mud clods for in games secrets. To find the tool you must get to the level named Search of yamashitakas gold and find the lotus flower on a statue inside the palace. Walk up to the front of it and you'll pick it up. As you fall down the hole, go down to the end of the hall into a room with a lying goold buddha statue. There is a pedsetal. Press X on it and it should say  YOU HAVE REACHED ENLIGHTENMENT. Then a door will appear to the right and in there is a hammer-like tool.

Dissapearing Soldier: 
When doing the 4th mission, Midnight attack on Guadacanal, when the second soldier leaves you and and the other character to ''cover you'' from behind, go in front of him and push him through the level by walking into him. You will have to angle some pushes too. After pushing him a bit, he will vanish and never be seen again, even if you go back to the spot he was originally at.